LNFKFNFISLMNIKALLLITSAIFISACSPYIVTANPNHSASKSDEKAEKIKNLFNEAHT
Query: 1 LNFKFNFISLMNIKALLLITSAIFISACSPYIVTANPNHSASKSDEKAEKIKNLFNEAHT 60 Below is an illustration of how this can be done using LAPIS: One of its uses is to make data presentation simpler for analysis by extracting suitable information from a text file.įor example, it can be used to extract only the subject and the identifier (NCBI GI number) information from a BLAST result.
LAPIS is an Open Source software written in JAVA.
Enter the administrator password of your computer when prompted.
Navigate to the folder (/Users/asif/Downloads/AVANA) on the Terminal.ħ) Make the "runAvana.sh" file executable through the following command:ĩ) Sudo is to give you admin access in case you need authorisation. Java -Xms256m -Xmx800m it.AvanaGUIĥ) In your case, replace the path (/Users/asif/Downloads/AVANA) in "AVANA_HOME" line to where you have installed the tool.Ħ) Open the Terminal. Then paste the following new content to the file:Įxport AVANA_HOME=/Users/asif/Downloads/AVANAĮxport CLASSPATH=$AVANA_HOME/avana.jar:$AVANA_HOME/avana-gui.jar:$AVANA_HOME/lib/biojava-1.4.jar:$AVANA_HOME/lib/bytecode-0.92.jar:$AVANA_HOME/lib/commons-beanutils-1.7.0.jar:$AVANA_HOME/lib/commons-logging-1.1.jar:$AVANA_HOME/lib/commons-math-1.1.jar:$AVANA_HOME/lib/jcommon-1.0.0.jar:$AVANA_HOME/lib/jfreechart-1.0.1.jar You can choose to either keep or delete the "*.bat" file, it would not affect the execution of AVANA on a Mac / Linux machine.Ĥ) Open the "runAvana.sh" file and delete the existing content inside. To do this, either rename the windows batch file to "runAvana.sh" or create a new file with the name "runAvana.sh". We would need to either convert this Windows batch file (*.bat) to a Unix batch file (*.sh). Go to that folder and you should see a bunch of files, in particular a file entitled "runAvana.bat". For this tutorial, let's say it is installed in "/Users/asif/Downloads/AVANA".
It would be preferred to not install this in the Applications folder, instead save it in an easy to find directory under your user profile, such "/Users/asif/Downloads/AVANA", where "AVANA" is a folder you created under the "Downloads".ģ) Go to the folder where you installed AVANA. During the installation process, you would be asked where to install Avana. Complete the download and installation of the Java files. While installing, if you don't have certain java run time environment file, you will be promoted to download. In order to run it on a Mac or Linux machine, one needs to follow the steps below:Ģ) Install the file by double clicking on the downloaded file. Although the AVANA tool is build using Java, the installer available on SourceForge () is custom-built for Windows machines.